mixcr groupClones

Groups clones in .clna/.clns files by Cell tags. Grouped clones can be exported using mixcr exportCloneGroups.

mixcr exportClonesOverlap 
    [--report <path>] 
    [--json-report <path>] 
    [--use-local-temp]
    [--force-overwrite]
    [--no-warnings]
    [--verbose]
    [--help] 
    clones.(clns|clna) 
    grouped.(clns|clna)

clones.(clns|clna)

Path to input file.

grouped.(clns|clna)

Path where to write output. Will have the same file type.

-r, --report <path>

Report file (human-readable version, see -j / --json-report for machine readable report).

-j, --json-report <path>

JSON formatted report file.

--use-local-temp

Put temporary files in the same folder as the output files.

-f, --force-overwrite

Force overwrite of output file(s).

-nw, --no-warnings

Suppress all warning messages.

--verbose

Verbose messages.

-h, --help

Show this help message and exit.